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Quinoa Heat Data Explorer
This tool is brought to you by the Gehan Lab at the Donald Danforth Plant Science Center. For the code used to generate this app, please visit our Github . For more information on how the data was processed please refer to doi: https://doi.org/10.1101/131185 . To download the raw data go here:
Using this Tool
In the SAMPLE INFO tab see the available datasets and conditions
In the SEARCH AND BROWSE DATA tab above, you can search for genes of interest using by either the search bar or by uploading a .txt file with gene ids. Alternatively, you can use the data filters to browse the data.Once you have loaded or searched for your selections the data can be viewed and dowloaded. A plot of the data can be seen on the Plot Data tab once the plot button is hit.
In the PLOT DATA tab above, data selected from Select Data or Browse Data tabs is plotted
Sample Info
Notes for Reference XXX: Quinoa was grown xxx. Again, for more details sampling conditions, please refer to XXXXX(Pub/Preprint). Differentially expressed genes are between corresponding control (C1 and C11) and experimental samples:
Search Data with GENEID or GO
Search using small sets of GENEIDs
GENEIDs, Orthologs, or GO separated by a comma are allowed
Search using small sets of GO TERMS
Search using small sets of ORTHOLOG GENEIDs
refresh page to clear search
Search Data with File
Upload a file of GENEIDs, the GENEIDs should not be quoted, one line per geneid
Upload a file of ORTHOLOG GENEIDs, the ORTHOLOG GENEIDs should not be quoted, one line per geneid
refresh page to clear search
Genes, Orthologs, or GO Selected with Search
Browse and Filter Data
Data
Download Selected Data
Plot Data
We restrict plotting to 1000 genes. Please download data from 'Search and Browse Data' tab or run a local installation of Quinoa Heat Explorer if you want to graph more genes.
Contact US
For questions or if you are interested in adding your own data contact Malia Gehan
For mor information on the Gehan lab visit our website